What is Molecular: Definition and 581 Discussions

A molecule is an electrically neutral group of two or more atoms held together by chemical bonds. Molecules are distinguished from ions by their lack of electrical charge.
In quantum physics, organic chemistry, and biochemistry, the distinction from ions is dropped and molecule is often used when referring to polyatomic ions.
In the kinetic theory of gases, the term molecule is often used for any gaseous particle regardless of its composition. This violates the definition that a molecule contain two or more atoms, since the noble gases are individual atoms.A molecule may be homonuclear, that is, it consists of atoms of one chemical element, as with two atoms in the oxygen molecule (O2); or it may be heteronuclear, a chemical compound composed of more than one element, as with water (two hydrogen atoms and one oxygen atom; H2O).
Atoms and complexes connected by non-covalent interactions, such as hydrogen bonds or ionic bonds, are typically not considered single molecules.Molecules as components of matter are common. They also make up most of the oceans and atmosphere. Most organic substances are molecules. The substances of life are molecules, e.g. proteins, the amino acids they are made of, the nucleic acids (DNA & RNA), sugars, carbohydrates, fats, and vitamins. The nutrient minerals ordinarily are not molecules, e.g. iron sulfate.
However, the majority of familiar solid substances on Earth are not made of molecules. These include all of the minerals that make up the substance of the Earth, soil, dirt, sand, clay, pebbles, rocks, boulders, bedrock, the molten interior, and the core of the Earth. All of these contain many chemical bonds, but are not made of identifiable molecules.
No typical molecule can be defined for salts nor for covalent crystals, although these are often composed of repeating unit cells that extend either in a plane, e.g. graphene; or three-dimensionally e.g. diamond, quartz, sodium chloride. The theme of repeated unit-cellular-structure also holds for most metals which are condensed phases with metallic bonding. Thus solid metals are not made of molecules.
In glasses, which are solids that exist in a vitreous disordered state, the atoms are held together by chemical bonds with no presence of any definable molecule, nor any of the regularity of repeating unit-cellular-structure that characterizes salts, covalent crystals, and metals.

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  1. P

    Net Force and Molecular State: Exploring Effects

    Why does a body accelerate when it experiences a net force? Is there any change in molecular state of the body when it experiences a force?
  2. C

    Exploring "Spin" in Molecular Biology and Physics

    So my main area of research is molecular biology and biochemistry, but nuclear and particle physics frequently manages to find its way in it and it's always baffling to me. I've been participating in research on bacterial Cytochrome P450 enzymes; they catalyze the oxidation of organic...
  3. C

    What's a good field to combine with molecular biology and biochemistry?

    So I'm about to graduate with a degree in molecular biology and biochemistry. I don't want to do grad school right away; I want to try to get some private sector experience first. I'm open studying pharmacology, toxicology and such, but I'm really more interested in industrial and...
  4. J

    Using quantum mechanical forces in Newtonian molecular dynamics

    Hi All, I'm trying to write some "wrapper" software that uses forces calculated from a quantum mechanical potential (ie. Hartree-Fock, DFT, etc.) to evolve a system according to classical Newtonian mechanics (ignoring any periodic boundary conditions, etc.). I believe I have successfully coded...
  5. S

    What does invalid pair_style mean in LAMMPS?

    Hi; I'm a new user of molecular dynamic code LAMMPS and I have a problem when I want first to compute samples problems.I beg erverybody who have already work with lammps to help me. When I want to compute the first examples called COLLOID; an error occurs like: "invalid pair_style".I would like...
  6. Z

    Molecular Diameter Units: Understanding the Meaning of pm

    Homework Statement I'm reading a worked problem in my "Fundamentals-of-Physics" textbook, and it states Homework Equations The Attempt at a Solution I was wondering what are the molecular diameter units which I have emboldened? What does pm stand for? Thank you
  7. nukeman

    Chemistry *Simple Molecular Formula question - Thanks

    Homework Statement I have to write the formula for Chloroform. As seen in this image: Now I know it has 3 atoms of CL, 1 atom of C, and 1 atom of H. I know the answer is CHCl3 But...why is that order. Why not Cl3CH ? Homework Equations The Attempt at a Solution
  8. F

    Could molecular substitution occur?

    Suppose we lived in significantly hotter conditions that what we live in right now (or lower pressure)... could organisms composed of Tin or Lead as opposed to carbon, Bismuth/Antimony as opposed to Nitrogen, Selenium and Tellurium as opposed to oxygen and sulfur respectively, and substances...
  9. C

    Molecular orbital configurations (bond order and electron config.)

    Hey guys. I'm a little confused about calculating the bond order and choosing the correct electron configuration. Compare these two calculations (from my textbook): http://oi44.tinypic.com/2vt8krp.jpg and http://oi39.tinypic.com/sv19hc.jpg As you can see, the electron configuration for...
  10. M

    Programs Choosing suitable math subjects for a Molecular Biology/Math double major

    I'm in the second year of my studies of molecular biology and in the first year of my mathematics degree (in most german universities the concept of a "double major" does not really exist, so you need to "enroll" a second time in order to be granted two degrees at once). I'd certainly like to...
  11. L

    Why is Q=q^{N} only valid for distinguishable particles?

    The probability of finding the system in microscopic state i is: p_{i}=\dfrac{1}{Q}e^{-\beta E_{i}} Where Q is the partition function. Assumption: molecule n occupies the i_{n}th molecular state (every molecule is a system). The total energy becomes...
  12. R

    Question about molecular orbital theory

    I know that the sigma 2p bonding orbital could be less/higher in energy than the pi 2p bonding (based on if it is C2,N2,B2 etc), but Why is the sigma 2p antibonding orbital always higher in energy than the pi 2p antibonding one?
  13. M

    Can sodium chloride be categorised as a giant molecular structure

    I was attempting this question where I had to say which, out of graphite, diamond and sodium chloride represent a giant molecular structure? The answer is only the first two. Why is the latter excluded?
  14. D

    Molecular spectroscopy and accepted literature values

    Hi, I have finished an experiment about vibronic transitions for the N_2 molecule and I'd like to compare my results ( vibrational frequencies and dissociation energies of the electronic states interested in the N_2 second positive and N+_2 first negative band systems ) with the accepted...
  15. Z

    Trying to Understand Molecular Excited States Notation

    Hey guys, I'm an engineering PhD student, and I'm doing some work with laser-induced fluorescence. At the moment, I'm trying to understand some notation about the excited states of nitrogen dioxide. One of the papers I'm looking at, V.M. Donnelly, et al. J. Chem. Phys. 71, 659 (1979), is saying...
  16. A

    Is it wise to take Molecular Biology without taking Genetics?

    I'm not too sure if this is the correct subforum to post this question in. Anyways I have taken Biochemistry only. I signed up to take molecular biology and I'm wondering if that is a bad idea with no previous coursework taken in genetics (the only biology college course I have taken is...
  17. M

    Do Biology Classes have to much emphisis on Molecular Biology

    I have worked in the field of wildlife biology for years and have recently switched professions to teaching. One of my biggest concerns with the current biology curriculum is that it seems way too obsessed with it's molecular aspects. I think this over-focus can be extremely harmful to the...
  18. R

    Molecular Velocity: Solving for Collision Rates

    Homework Statement http://img191.imageshack.us/img191/3277/59596364.jpg The Attempt at a Solution I used the Maxwell-Boltzmann distribution equation: KE_{avg}=\frac{1}{2}mv^2 = \frac{3}{2}k T \implies v = \sqrt{\frac{3kT}{m}} The most probable velocity for argon would be: v =...
  19. A

    Tension force at molecular level

    hey, i want to understand how does the molecules of a rope or cable generate tension when force is applied at both ends. consider a block of mass m hanging from a ceiling with the help of a string. please explain what's goin on at the molecular level in a rope when forces are applied at both ends.
  20. L

    What is the dipole moment of 1,3,5-trichloro benzene based on the given data?

    Could anyone help me in solving this following problem. From the given data, i could calculate the dipole moments of all the disubstituted chlorobenzenes(o-, p- and m- isomers)..but i couldn't calculate the following...I would be thankful if anyone comes up with a needful explanation...thanks...
  21. S

    Sulfuric Acid - Ionic, Polar Molecular or Non Polar Molecular

    What type of bond is Sulfuric Acid (H2SO4(aq))? People tell me its ionic because the acid is made up of a polyatomic ion. However, many sources online say that the acid is polar. I can't seem to figure out which bond it is.
  22. V

    Looking for website on Molecular Neuroscience

    Hello, some time ago I found a website dedicated to neuroscience. It deals with neurons, receptors, synapses etc on molecular level. The site is free and has a lot of information, including pictures, diagrammes etc. I think it is a project of some professor who wants that information be...
  23. H

    Chemistry Classify each solid as a covalent, ionic, metallic, or molecular solid.

    Homework Statement As the title would lead you to believe I have to classify each solid as a covalent, ionic, metallic, or molecular solid. These are the given solids Calcium Fluoride Rhombic Sulfur Frozen Ethanol Pure Calcium Homework Equations n / a The Attempt at a...
  24. C

    Chemistry Electron Geometry and Molecular Geometry

    Homework Statement Determine the electron geometry and molecular geometry or the underlined carbon in CH3CN. A) tetrahedral/tetrahedral B) linear/trigonal planar C) trigonal planar/bent D)linear/linear E)trigonal planar/trigonal planar I'm not really sure how to structure this...
  25. T

    A question on Molecular Orbital theory

    My question is as follows. When (qualitatively at least) constructing molecular orbitals for a given molecule, a few "rules" are used to construct them. I'm wondering why the "rules" exist at all. For example, it is given that orbitals must have "similar energies" (however one quantifies...
  26. A

    What is the molecular mass of the unknown gas in the atmosphere?

    Homework Statement I need to calculate the mas of a molecule of an unknown gas in the atmosphere from the values: T = 500 K mass of the planet = 1.5 × 1024 kg radius is 3.0 × 106 m universal constant of gravitation, G = 6.67 × 10^−11 N m^2 kg^−2 P at ground level = 2.0 × 10^7 Pa P...
  27. G

    Temperature and molecular kinetic energy. [PLEASE help me]

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  28. J

    Relative molecular mass using unified mass unit

    The problem A bubble of kryptopn (Kr) gas is formed underwater. The bubble has a volume of 2.14x10-6m3 and contains 1.70x1020 krypton molecules each of mass 1.39x10-25kg. The pressure of the gas inside the bubble is 300kPa. Calculate the relative molecular mass.The attempt at a solution When...
  29. edpell

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  30. D

    Molecular Dynamics simulations Surface interaction energy

    Hey, I've simulated a solid metal cluster of gold fcc100 And a surface Platinum in fcc111 using a classical mechanical approach. Do you think i could get the surface free energies(the ones to use in determining the Wulff shape) from periodic boundary conditions and if so how? I am really...
  31. D

    Molecular Dynamics Wulff Shape

    Hi, Say you have a simulation of a nano particle resting on a flat surface of metals. It is described by the effective medium theory. How do you find the free energy of a face to be used in the Wulff construction. A suggestion i got was to use periodic boundary conditions in all directions...
  32. M

    Questions on the kinetic molecular theory of gases

    Hello,world 1-"the intermolecular attractive forces between gas particles are very weak due to the large intermolecular distances separating them" Is that true? this is wriiten in my textbook and it is confusing me because I've always thought of it in a different way ,I thought the...
  33. P

    How does the molecular bonding effect the resistivity of a material?

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  34. C

    Molecular machinery - Mechanism of action?

    I'm watching a fascinating video about DNA replication: Can someone explain briefly what the mechanism of action (and locomotion) is for all these little machines? Is it simply electric potential (due to ionization?) ? Thanks
  35. D

    Molecular Orbital energy levels

    Hi everyone I'm currently studying the MO theory and ran into some trouble understanding orbital energy levels. As I have previously read, σ bonds are stronger than ∏ bonds, therefore are lower in orbital energy. However, from the MO theory, the σ2p orbital is actually higher in energy than...
  36. G

    Chemistry What is the Molecular Weight of a Gas Using the Ideal Gas Law?

    [b]1. A 0.0097561 g quantity of an unknown gas occupies 0.2 L at 500 K and 2 atm. What is the Molecular Weight (MW) of the gas ? [b]2. PV = nRT [b]3. mw=0.0097561*0.082*500/2*0.2 mw=1
  37. Ryan_m_b

    Who wants to be an amateur molecular biologist?

    It looks like the bio-hacker movement are a step closer to their dream as one man tries to make a http://www.mlo-online.com/features/201112/tips-from-the-clinical-experts/the-quest-for-the-500-dollar-home-molecular-biology-laboratory.aspx. I've always been in two minds about DIY biology, I've...
  38. R

    Chemistry Relation between molecular mass and molar mass

    Homework Statement What is the difference between molecular mass and molar mass? Are they related? Homework Equations moles = total mass/ mass/mole The Attempt at a Solution I can't find any explanation in my lecture notes. I think that: molecular mass = mass of one molecule...
  39. C

    Stuck in High School: Choosing a College and Major for Molecular Assemblers

    I am a junior in high school I am at a total lost to what college I should apply to and what I should major in. I know that I want to work on molecular assemblers later in life, but I don't know what school will be best for me. Can anyone please help me find out which school I should apply to...
  40. A

    Molecular Behavior Near Faucet: Exploring the Continuity Principle

    From the viewpoint of the continuity principle, we know that the stream of water is fatter near the mouth of the faucet and skinner lower down. The question is how single molecules understand when/how they should deviate from their perpendicular free fall to a deviated one ?
  41. N

    Is Brownian Motion Linked to Molecular Kinetic Energy Changes?

    Is the molecular kinetic energy associated with an increase of heat equally distributed to molecular vibrational, rotational, and translational energies? What is then the exact link to Brownian motion?
  42. B

    Kinetic Molecular Theory of Gases

    Hello, So, I am reading this theory, and I come across this sentence explaining to me that gas particles of different mass have the same average kinetic energy at a particular temperature. Is this somehow due to momentum? Each particle is given a certain energy which will cause them to move...
  43. B

    Maxwell's Demon via molecular reed valves can produce work?

    Well not literally The Maxwell's Demon... If a one-way reed valve can be brought down to size of only a few molecules, don't you think it could allow passage of a gas molecule across a barrier in one direction only? How I think it could work: -The small size (molecular) of the valve is...
  44. S

    Molecular orbital analysis - d0 complexes

    1. Homework Statement I'm trying to perform a molecular orbital analysis of a tungsten hydride complex, (WH6) and I haven't been able to find an intuitive or basic definition for a "d0 complex". Every time I read an article about a d0 complex they tangentially mention them and then jump into...
  45. ShayanJ

    Molecular Ionization: Is Rydberg Formula Possible?

    Is there sth like rydberg formula for Molecular ionization?
  46. P

    Chemistry Molecular formula of S in benzene

    The molal freezing point depression constant of benzene is 5.07 K kg/mol. A .45% solution of monoclinic sulfur in benzene freezes .088K below the freezing point of pure benzene. Find the molecular formula of sulfur in benzene. Can someone tell me if the answer is S2 ? I guess I'm not...
  47. K

    H20 Molecular shift - what is the initial state just below the Dew Point

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  48. M

    Determining When Molecular Compounds Ionize When Dissolved Into Water

    Hello, This is a matter I have been having some difficulties with for the past few days. My question: How is it that I would go about distinguishing molecular compounds in regards to their capacity to ionize and yield hydrogen ions when dissolved into distilled water? For example, if...
  49. K

    Chemistry Chemistry: Molecular vs. Atomic Iodine

    Hello, This question is a theory question: I have calculated the moles of molecular iodine in a problem (I2) and the next question asks to calculate the moles of atomic iodine. Do I just multiply the number I have by two (as iodine is a diatomic molecule) or is it a "trick" question and the...
  50. E

    Chemistry Nomenclature, molecular mass, moles help (attempted problems already)

    Alright, below are screen captures of some work that I'm tackling. They show my attempts and answers at the problems. I would like to know whether I'm correct or wrong and how to correct the mistakes. The one I need most help with is, the one where you're given density and asked to find...
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