RNA coding sequence for proteins

In summary, the direction of the nucleotide sequence and the presence of start and stop codons play a crucial role in determining whether a sequence of nucleotides codes for a protein. This means that the inverse or reciprocal of a given sequence may not necessarily code for a protein and may instead be a "dead-end" or nonsense codon. It is important to consider these factors when interpreting DNA or RNA sequences.
  • #1
Phil Core
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Simplistic Example
Given - DNA - RNA AATGTA codes for a protein.

1. Does the inverse ATGTAA usually/ever code for a protein?
2. Does the reciprocal RNA TTACAT usually/ever code for a protein?
 
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  • #2
RNA does not have "T", it has uracil, "U". ACTG are the nucleotides for DNA, "ACUG" for RNA
DNA overall has a "start end, 5 prime" and a "finish end, 3 prime". Groups of three nucleotides are called codons, like in your example.

There are start codons and stop codons. So the direction of the nucleotide sequence to interpret has a specific direction to it for a protein or polypeptide.

For example: DNA copying (replication)
DNA polymerase adds nucleotides to the deoxyribose (3') ended strand in a 5' to 3' direction. Lagging strand is synthesised in fragments. Nucleotides cannot be added to the phosphate (5') end because DNA polymerase can only add DNA nucleotides in a 5' to 3' direction. So a given set of codons has direction to it dictated overall by 5 prime- 3 prime, and stop and start codons.

So your question needs a tune up. There is direction, plus codons for stop and start.

A very misleading answer to the question as asked is yes. This ignores some combinations of nucleotide triplets could be a codon when "read forwards" and something else when "read backwards", may be a so-called dead end codon. Other names for these "garbage" triplets are termination codon or nonsense codon. I like "dead-end" for teaching.
 
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  • #3
Sorry I can not even get the basics correct. You are a good man Jim and I appreciate your answer. You made things a lot clearer for me.
 
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What is an RNA coding sequence for proteins?

An RNA coding sequence for proteins is a specific sequence of nucleotides on a messenger RNA (mRNA) molecule that codes for a specific amino acid sequence. This sequence is translated by ribosomes in the cytoplasm to produce a specific protein.

How is an RNA coding sequence determined?

An RNA coding sequence is determined by the sequence of nucleotides on the DNA molecule. The DNA sequence is transcribed into mRNA, and the mRNA sequence is then translated into a specific amino acid sequence, which determines the protein that will be produced.

What is the role of RNA coding sequences in protein synthesis?

The role of RNA coding sequences in protein synthesis is to provide the instructions for the specific amino acid sequence that will make up a protein. This sequence determines the structure and function of the protein.

Can RNA coding sequences be modified or altered?

Yes, RNA coding sequences can be modified or altered through a process called RNA editing. This can result in changes to the amino acid sequence and ultimately affect the structure and function of the protein produced.

Are all RNA coding sequences used in protein synthesis?

No, not all RNA coding sequences are used in protein synthesis. Some sequences, called non-coding RNA, have other important functions such as regulating gene expression or serving as structural components in ribosomes.

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