Optimizing dNTP Concentrations for PCR Reactions

In summary, the concentration of dNTP specified on the bottle's label refers to the concentration of each individual nucleotide. The protocol requires a final concentration of 200uM for each nucleotide, so if using separate tubes, you will need to reach this concentration for each nucleotide. However, if using a premixed dNTP solution, you can simply add a certain volume to reach the desired concentration of 200uM for each nucleotide.
  • #1
sotellme
75
0
Does the concentration of dNTP in the bottle's label specified the total concentration of the four nucleotides or only each of them? When it says in the protocol "each 200uM" does it mean that i have to add a concentration 4 fold (200uM * 4) of the bottle to get all the four different nucleotides or do i only need a final concentration of 200uM in the PCR reaction? The label says 5mM.
 
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  • #2
You can double check with the manufacturer (always a good idea when unsure about product labeling), but it should be the concentration of each dNTP.
 
  • #3
The protocol states that you need 200 uM of each nucleotides, then you need to reach to concentration for each nucleotides if they come in separate tubes. Some compagnies have set of 4 tubes for each nucleotides and also have a premixed nucleotides solution.
If you have premixed dNTPs then you just add a certain volume of the dTNPs mix to reach 200 uM. Each nucleotides will have a concentration of 200 uM. So for a 50 uL PCR you will need 2 uL of your 5 mM dNTP mix.
 

Related to Optimizing dNTP Concentrations for PCR Reactions

What is DNTP final concentration?

DNTP (deoxynucleotide triphosphate) final concentration refers to the total concentration of the four building blocks of DNA (dATP, dCTP, dGTP, and dTTP) in a solution. It is typically measured in micromolar (μM) or millimolar (mM) units.

Why is DNTP final concentration important?

DNTP final concentration is important because it directly affects the efficiency and accuracy of DNA amplification reactions, such as PCR. If the concentration is too low, the amplification may not occur efficiently. If the concentration is too high, it can lead to non-specific amplification and errors in the final DNA sequence.

How do you calculate the DNTP final concentration?

To calculate the DNTP final concentration, you need to know the individual concentrations of dATP, dCTP, dGTP, and dTTP in the solution. Then, you can simply add up the concentrations of each of the four nucleotides to get the total DNTP final concentration.

What is the recommended DNTP final concentration for PCR?

The recommended DNTP final concentration for PCR is usually between 200-500 μM. However, this may vary depending on the specific PCR protocol and the type of DNA polymerase used.

How do you prepare a solution with a specific DNTP final concentration?

To prepare a solution with a specific DNTP final concentration, you will need to know the desired final concentration and the volume of the solution you want to make. Then, you can use the formula C1V1 = C2V2, where C1 and V1 are the initial concentration and volume of the DNTP stock solution, and C2 and V2 are the desired final concentration and volume of the solution you want to make. This will help you determine the volume of the DNTP stock solution to add to the final solution to achieve the desired concentration.

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