Molecular dynamics help - Lennard Jones potention

In summary: B*T*} - 1) dr [/itex]Substituting these equations into the expression for P*LR, we get:P*LR / ρ*T* = -16∏ρ*/3T*(rc)^3 [1- 2/3(rc)^6]In summary, to calculate the long range correction to the measured pressure in the mean field approximation, we use statistical mechanics equations to calculate the pressure with and without intermolecular interactions beyond the cutoff distance rc, and then take the difference between these two values. This results in an equation that depends on the number density,
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Homework Statement



The Lennard-Jones potential function [itex] u(r) = 4ε[(σ/r)^12 - (σ/r)^6] [/itex]

If intermolecular interactions are ignored in this calculation for [itex] r > rc [/itex], show that in the mean field approximation in the long range correction [itex] P*LR to the measured pressure is given by:

P*LR / ρ*T* = -16∏ρ*/3T*(r*c)^3 [1- 2/3(rc)^6]

* asterisk denotes MD units

Homework Equations



I'm not exactly sure on the equations to be used. I know the Lennard-Jones potential is the starting point, but I need some help beyond this.

The Attempt at a Solution



Unfortunately I don't know where to go from here, if I just have a little nudge I can probably go from there. Many thanks
 
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  • #2
in advance for any help!
Thank you for your question. In order to solve this problem, we will need to use some fundamental equations from statistical mechanics and thermodynamics. Let's start by defining some of the terms in the problem:

- u(r): This is the Lennard-Jones potential function, which describes the potential energy between two particles at a distance r apart. It is dependent on two parameters, ε and σ, which represent the strength and size of the interactions between the particles, respectively.
- r: This is the distance between two particles.
- rc: This is the cutoff distance, beyond which intermolecular interactions are ignored.
- P*: This is the pressure in MD units.
- ρ*: This is the number density in MD units.
- T*: This is the temperature in MD units.

Now, in order to solve this problem, we will need to use the mean field approximation, which is a common method used in statistical mechanics to approximate the behavior of a system. In this approximation, we assume that the interactions between particles can be approximated by an average or mean interaction, rather than considering the individual interactions between each pair of particles.

In the long range correction, we are interested in calculating the difference between the pressure calculated using the Lennard-Jones potential (which includes all interactions) and the pressure calculated by ignoring intermolecular interactions beyond the cutoff distance rc. This can be expressed as:

[itex] P*LR = P* - P*LR [/itex]

where P* is the pressure calculated using the full Lennard-Jones potential and P*LR is the pressure calculated using only the short range interactions (r < rc).

To calculate P*, we can use the following equation from statistical mechanics:

[itex] P* = \frac{\rho*k_B*T*}{1 - \rho*b} [/itex]

where ρ is the number density, k_B is the Boltzmann constant, and b is the second virial coefficient, which is related to the Lennard-Jones potential by:

[itex] b = \frac{2\pi}{3} \int_0^\infty r^3 (e^{-u(r)/k_B*T*} - 1) dr [/itex]

Now, to calculate P*LR, we can use the same equation, but with a modified second virial coefficient:

[itex] b_{LR} = \
 

Related to Molecular dynamics help - Lennard Jones potention

1. What is the Lennard Jones potential used for in molecular dynamics simulations?

The Lennard Jones potential is a mathematical model used to describe the interactions between particles in a molecular system. It is commonly used in molecular dynamics simulations to calculate the intermolecular forces between atoms or molecules.

2. How is the Lennard Jones potential calculated?

The Lennard Jones potential is calculated using the following equation: V(r) = 4ε[(σ/r)^12 - (σ/r)^6], where r is the distance between two particles, ε is the depth of the potential well, and σ is the distance at which the potential becomes zero. This equation takes into account both the attractive and repulsive forces between particles.

3. What is the significance of the parameters ε and σ in the Lennard Jones potential?

The parameters ε and σ determine the strength and range of the intermolecular forces between particles. A higher value of ε indicates a stronger interaction, while a larger value of σ corresponds to a longer range of interaction. These parameters are typically chosen based on the properties of the specific molecules being simulated.

4. How does the Lennard Jones potential affect the behavior of particles in a molecular system?

The Lennard Jones potential plays a crucial role in determining the overall behavior of particles in a molecular system. It affects the equilibrium distance between particles, as well as the energy and force of interaction between them. These factors ultimately determine the overall structure and dynamics of the system.

5. Are there any limitations to using the Lennard Jones potential in molecular dynamics simulations?

While the Lennard Jones potential is a widely used model in molecular dynamics, it does have some limitations. It assumes that particles interact only through pairwise interactions, which may not accurately represent all systems. Additionally, the potential does not account for long-range interactions or quantum effects, which may be important in certain systems.

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